Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015791856.1_cds_XP_016509148.1_2139
CDS Infomation

[gene=LOC107826656] [db_xref=GeneID:107826656] [protein=protein TIME FOR COFFEE-like] [partial=3'] [protein_id=XP_016509148.1] [location=join(2335..2449,2539..3075,3160..3368,3459..3708,3797..4181,4260..4314,4395..4496,4583..4883,4967..>5014)] [gbkey=CDS]
Sequence

ATGGATAGGAACAGAGAAGCAAGAAGAAGTGGGGGTATGGTAGCAGCGGCAGCTACATCT
AATGGATTATCATCAAGACGCAGACATAGAACTAATAGTCTTAGAGATTCCCCTGATGAA
GATGGGGGTGTAGAGATACAAGAATCTGTAAGGTTAAGGGAAAGAGTGAAGAAAGATCGA
GATCGTGAACGGGAAAGAGAAAGAGAACGAGAACGAGAGAGAGAAAGGGATAATAGGGAT
AGAGATAGAGATAGGATAAGTCGGAGTAAAAGGAGGAGAGGTGAAAGGTTAATTGGTGGT
GTTGATGATAGTTCAGAAGAAAGTGTAAACGATGATGAAGAAGAAGATGATGAAGATACT
ACTACTACAACTACTGCTACTGCTAACAACGTTGGTGTTTCAGGTAGTAGTAGTACAAGG
TTGTTGCCGCCGAATCCTCCGGTACCGGTGACGGTGGGGTCCATTTCAAATCACCACCAT
CATCATAATAACCATAATCATAATAATCATCATTTACAGCCTCCGAGGAAGAGTTTTCCA
CCAAATACTACAAGGGTTTTTAGGACAGCAACACCAGCAGCAGCAGCAGCTCCTGTTTGG
AAACCTGGTGATGAAATGATTGGTGTTTCTGTCCCAAGAAAAGCCCGTTCTGCATCTACT
AAGAGGTCACATGATTGGATTTCTGGGGTCAGCGGTGGTGGTTGTGTTGGTGGTAATAGT
GGTGTTATTACAGGAGAGCAAATACATCAGCAAGTTTCGACAGCATCGCCGGTGAGACAG
AATATTCCGGCAACATCAACACAATCACCGGCAGCTCCTTTATCTCCATCTTCTTCCAAT
GTTTCAGTCAGAAAGAAAATTAAGCCTAATGGACAAAAAAGGCCGCCGGCAAAGTCACCA
CCAAAAGCTGCTTCATCCAACAACCCTGAAGAGCTAGAGATTGAGATTGCTGAAGTGTTA
TACGGGTTGATGACCCAGTCACAAGGACCTTCCAAGAAAGAAAGTGGTGGAGGAGGACGA
AATGATACAACAAGAGAAGTCAATAACAGATCCAGAGTTTCTTCTCCTGTTTCAAATTCT
AACTCATCAGCTACTCCTTTATCTGCTGTTGCTCCAAAGAGGAAAAGACCGAGGCAAGTC
TTGGAAAATCCTGGAGGATTTGGTGCAAGGAGCAGCCCCATTTCATCTTCTACAGCTACT
AATAAAGTGGAGATGGATCAGACAACAACAATGAAGATGGAGGTTTCTTCTCCTAATTTG
GAGAAGACCCCACAATCTGCTGCTGAAAATGGTGTATCTTTATATGATTTAAGTGCTTCT
GTACAAAGTTTGCCGGTTGCATCGGATCCGGTACCGGAGACGATGAAGGTGGAATCTGAG
GCCAAGAGGAGGCCTGAGGAATCTGAATTTATGGAGAGTAAGGAGGAGGTGAGGGAGTCT
TCTACTTTGGGAGCAGAAAATAGTAATCGTGAGGATGCTGTTGCAGTTACCCAAGTGATT
GTTTCAGAAGTTGAAAGTCAGAGAGAGGAGAAATTCCAGATAGATCTTATGGCCCCTCCA
CCGCAGTTAAGATCATCACCTGAAAGGGAAGCTGAGATAGATTTTGGATCAGCAGCTGTG
GATAAGAAGCCTATTTTAGCAGAAAATATAGTAGAAATGAAGCCTTCAGTGAAGGAGAAG
GATAATGAAAGGATTGGCAAGGCTGAGAAAGAAGAAGTGATCAGTGTTGAAGCTGACGAA
AAGAAGACAAAAGCAGCAGCCCTTGAGGAACTTAATCCTCATAAGGCAAGTGAGGGTAGC
AGGGGTAGGAATATTGATCTTCAGCTAGATTTGGAAAGGCCAGAAAAGGATAGTGGTGTA
AGTAGCAAATTCCAACAGCAGAGTCAAAAGTTGCTGCAGCAGCAGCCTCCACCACAAAAA
GCTACTAAAGAAGAACCAATTATAGAAAAAACAGGTCAATCAAGCTCTTTACCAATGCCA
ATGTCTATGGCTAGCTGGCCTG

Peptide Sequence

PEP ID

XP_016509148.1
PEP Infomation

PREDICTED: protein TIME FOR COFFEE-like, partial [Nicotiana tabacum]
Sequence

MDRNREARRSGGMVAAAATSNGLSSRRRHRTNSLRDSPDEDGGVEIQESVRLRERVKKDR
DRERERERERERERERDNRDRDRDRISRSKRRRGERLIGGVDDSSEESVNDDEEEDDEDT
TTTTTATANNVGVSGSSSTRLLPPNPPVPVTVGSISNHHHHHNNHNHNNHHLQPPRKSFP
PNTTRVFRTATPAAAAAPVWKPGDEMIGVSVPRKARSASTKRSHDWISGVSGGGCVGGNS
GVITGEQIHQQVSTASPVRQNIPATSTQSPAAPLSPSSSNVSVRKKIKPNGQKRPPAKSP
PKAASSNNPEELEIEIAEVLYGLMTQSQGPSKKESGGGGRNDTTREVNNRSRVSSPVSNS
NSSATPLSAVAPKRKRPRQVLENPGGFGARSSPISSSTATNKVEMDQTTTMKMEVSSPNL
EKTPQSAAENGVSLYDLSASVQSLPVASDPVPETMKVESEAKRRPEESEFMESKEEVRES
STLGAENSNREDAVAVTQVIVSEVESQREEKFQIDLMAPPPQLRSSPEREAEIDFGSAAV
DKKPILAENIVEMKPSVKEKDNERIGKAEKEEVISVEADEKKTKAAALEELNPHKASEGS
RGRNIDLQLDLERPEKDSGVSSKFQQQSQKLLQQQPPPQKATKEEPIIEKTGQSSSLPMP
MSMASWP

Transcript Sequence

Gene sequence data has not been registered.